OBO Foundry dashboard analysis¶

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/tmp/ipykernel_396/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    2
unknown           1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 2 1950.333333 3061.570240 0.0 186.0 372.0 2925.5 5479.0
Declaration 2 476.000000 670.651176 0.0 92.5 185.0 714.0 1243.0
DisjointClasses 2 14.666667 23.692474 0.0 1.0 2.0 22.0 42.0
InverseObjectProperties 2 12.000000 18.248288 0.0 1.5 3.0 18.0 33.0
SubClassOf 2 617.000000 943.410303 0.0 74.0 148.0 925.5 1703.0
SubObjectPropertyOf 2 32.666667 49.812984 0.0 4.0 8.0 49.0 90.0
SymmetricObjectProperty 2 2.333333 3.214550 0.0 0.5 1.0 3.5 6.0
DataPropertyRange 2 11.333333 12.055428 0.0 5.0 10.0 17.0 24.0
ObjectPropertyRange 1 29.000000 50.229473 0.0 0.0 0.0 43.5 87.0
ObjectPropertyAssertion 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ObjectPropertyDomain 1 30.333333 52.538874 0.0 0.0 0.0 45.5 91.0
SubPropertyChainOf 1 5.000000 8.660254 0.0 0.0 0.0 7.5 15.0
Rule 1 1.333333 2.309401 0.0 0.0 0.0 2.0 4.0
SubAnnotationPropertyOf 1 8.000000 13.856406 0.0 0.0 0.0 12.0 24.0
SubDataPropertyOf 1 3.666667 6.350853 0.0 0.0 0.0 5.5 11.0
InverseFunctionalObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
IrrefexiveObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
EquivalentClasses 1 7.333333 12.701706 0.0 0.0 0.0 11.0 22.0
FunctionalObjectProperty 1 1.666667 2.886751 0.0 0.0 0.0 2.5 5.0
FunctionalDataProperty 1 2.000000 3.464102 0.0 0.0 0.0 3.0 6.0
EquivalentObjectProperties 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0
DifferentIndividuals 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
DataPropertyDomain 1 3.666667 6.350853 0.0 0.0 0.0 5.5 11.0
ClassAssertion 1 6.666667 11.547005 0.0 0.0 0.0 10.0 20.0
AnnotationPropertyRangeOf 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0
AnnotationPropertyDomain 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
TransitiveObjectProperty 1 3.000000 5.196152 0.0 0.0 0.0 4.5 9.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 2 1728.666667 2615.767829 0.0 224.0 448.0 2593.0 4738.0
DataExactCardinality 1 2.000000 3.464102 0.0 0.0 0.0 3.0 6.0
DataMinCardinality 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
DataSomeValuesFrom 1 8.666667 15.011107 0.0 0.0 0.0 13.0 26.0
ObjectAllValuesFrom 1 11.000000 19.052559 0.0 0.0 0.0 16.5 33.0
ObjectComplementOf 1 10.000000 17.320508 0.0 0.0 0.0 15.0 30.0
ObjectExactCardinality 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
ObjectIntersectionOf 1 9.333333 16.165808 0.0 0.0 0.0 14.0 28.0
ObjectMaxCardinality 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
ObjectMinCardinality 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
ObjectOneOf 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0
ObjectSomeValuesFrom 1 222.666667 385.669980 0.0 0.0 0.0 334.0 668.0
ObjectUnionOf 1 14.000000 24.248711 0.0 0.0 0.0 21.0 42.0

OBO Score (Experimental)

ontology score score_dash score_impact
0 gndo 0.433 0.867 0.0
1 mcro 0.412 0.824 0.0
2 vario 0.000 0.000 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 3.0 0.281667 0.244156 0.0 0.206 0.412 0.4225 0.433
score_dash 3.0 0.563667 0.488623 0.0 0.412 0.824 0.8455 0.867
score_impact 3.0 0.000000 0.000000 0.0 0.000 0.000 0.0000 0.000

OBO dependency graph